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Comprehensive tutorials in molecular modeling, bioinformatics, chemoinformatics, and computational chemistry. Support your research with theoretical knowledge, analysis methods, and best practices!


Step-by-Step Homology Modeling with SWISS-MODEL: From Template to 3D Structure
This tutorial covers the basic principles of the homology modeling method used to predict the three-dimensional structures of proteins and the implementation steps via the SWISS-MODEL tool. The workflow offered by SWISS-MODEL is explained in five basic steps, from entering the target protein sequence to selecting appropriate templates, from building the model to quality assessment.

Emre Can Buluz
May 17 min read
7 views
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Using AlphaFold2 Colab: Step-by-Step Protein Structure Prediction
AlphaFold2 represents a groundbreaking advancement in protein structure prediction, considered one of artificial intelligence's (AI) most...

Emre Can Buluz
Apr 286 min read
1 view
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Optimize Your Molecular Structure: Avogadro User Guide
Avogadro is an advanced molecule editing and visualization tool developed for use in fields such as computational chemistry, molecular...

Emre Can Buluz
Apr 283 min read
1 view
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Prediction of Protein Cut Sites with PeptideCutter Web Tool
The PeptideCutter web tool helps predict the cleavage sites of proteases or various chemicals in protein sequences. Protease cutting can...

Emre Can Buluz
Apr 283 min read
3 views
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A New Look at Chemical Molecule Similarity: SwissSimilarity Guide
SwissSimilarity is a user-friendly web tool that allows similarity analysis by comparing the properties of chemical molecules. This tool...

Emre Can Buluz
Apr 284 min read
1 view
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ProTox 3.0: Next Generation Toxicity Prediction for Chemical Compounds
In silico toxicity models aim to support existing in vitro toxicity methods for predicting the toxic effects of chemicals. In this way,...

Emre Can Buluz
Apr 285 min read
2 views
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Calculation of Biochemical Parameters of Proteins with ProtParam Web Tool
ProtParam is a powerful web tool that allows the calculation of various biochemical parameters on protein structures and sequences. This...

Emre Can Buluz
Apr 284 min read
4 views
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BIOVIA Discovery Studio Visualizer 2025 Linux (Ubuntu) Installation Guide
BIOVIA Discovery Studio Visualizer is a comprehensive guide prepared for the installation of the software that allows the visualization and analysis of molecular structures on Linux (Ubuntu) operating systems. This guide explains in detail the installation of the necessary packages, downloading the software, licensing procedures and adding icons to the desktop.

Ege Altun
Apr 284 min read
11 views
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